Assessment of somaclonal variation in somatic embryo-derived plants of yacon [Smallanthus sonchifolius (Poepp. and Endl.) H. Robinson] using inter simple sequence repeat analysis and flow cytometry
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Supplementary Files

Fig. 1 ISSR profile of control plant and in vitro regenerants (F1-F10) of S. sonchifolius using primer ´UBC834´ (L= ladder; CP = control plant)

Keywords

DNA polymorphism
ploidy level
proembryogenic callus
molecular markers

How to Cite

1.
Viehmannova I, Bortlova Z, Vitamvas J, Hlasna Cepkova P, Eliasova K, Svobodova E, Travnickova M. Assessment of somaclonal variation in somatic embryo-derived plants of yacon [Smallanthus sonchifolius (Poepp. and Endl.) H. Robinson] using inter simple sequence repeat analysis and flow cytometry. Electron. J. Biotechnol. [Internet]. 2014 Mar. 14 [cited 2024 Dec. 11];17(2). Available from: https://www.ejbiotechnology.info/index.php/ejbiotechnology/article/view/2013.12.011

Abstract

Background: Yacon (Smallanthus sonchifolius) is a root crop native to the Andean region. Low sexual reproductive capacity is a major constraint facing genetic breeding of this crop. Biotechnological techniques offer alternative ways to widen genetic variability. We investigated somaclonal variation in regenerants of yacon derived from in vitro somatic embryogenesis using simple sequence repeat (ISSR) analysis and flow cytometry.

Results: Twenty tested ISSR primers provided a total of 7,848 bands in 60 in vitro regenerants and control plant. The number of bands for each primer varied from 3 to 10, and an average of 6.95 bands was obtained per ISSR primer. Eight primers were polymorphic and generated 10 polymorphic bands with 7.19% mean polymorphism. ISSR analysis revealed genetic variability in 6 plants under study. These regenerants had Jaccard´s distances 0.104, 0.020, 0.040, 0.106, 0.163 and 0.040. Flow cytometric analysis did not reveal changes of relative nuclear DNA content in regenerants suggesting that the plants obtained via somatic embryogenesis had maintained stable octoploid level.

Conclusions: Our findings show that indirect somatic embryogenesis could be used in yacon improvement to widen genetic variability, especially when low sexual reproductive capacity hinders classical ways of breeding.

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