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Table 4. The association rules in a small
scale (repetitive sequences) and genome scale.
|
Organism |
Association Rules |
Occurrences in Repeats |
Occurrences in Genome |
||
|
Window=1 |
Window =5 |
Window =10 |
|||
|
Thermotoga maritima |
c-Ets-2=>R03553 |
272 |
1506 |
1700 |
2019 |
|
R03553=>R01230 |
220 |
0 |
56 |
332 |
|
|
c-Ets-2=>R01230 |
218 |
0 |
66 |
206 |
|
|
Mycoplasma genitalium |
TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a |
208 |
3785 |
3954 |
4557 |
|
Treponema pallidum subsp. Pallidum |
Sp1=>R03047 |
33 |
549 |
719 |
1219 |
|
Sp1=>T-Ag |
39 |
984 |
1285 |
1779 |
|
|
Sp1=>GAL4 |
39 |
474 |
1150 |
1883 |
|
|
GAL4=>R04141 |
39 |
0 |
1641 |
1853 |
|
|
R01203=>R04398 |
33 |
0 |
602 |
817 |
|
|
GAL4=>R03047 |
39 |
0 |
161 |
416 |
|
|
R04398=>R00290\R01241\R01244 |
43 |
879 |
894 |
940 |
|
|
Ureaplasma urealyticum |
YY1=>R01513 |
62 |
754 |
2003 |
2614 |
|
YY1=>Pit-1a |
60 |
0 |
893 |
1859 |
|
|
N-Oct-3=>Pit-1a |
64 |
179 |
2610 |
3230 |
|
|
TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a |
72 |
3202 |
3295 |
3650 |
|
|
Pit-1a=>R01598 |
50 |
0 |
1305 |
1621 |
|
|
Pit-1a=>YY1 |
60 |
0 |
893 |
1859 |
|
|
R01513=>YY1 |
62 |
754 |
2003 |
2614 |
|
|
Pyrococcus abyssi |
YY1=>R00231\R00232\R00335\R00668\R00669\R00761\R01081\R01345\R01445\R01446\R02955\R02957 |
39 |
0 |
34 |
105 |
|
YY1=>R00388 |
41 |
0 |
48 |
175 |
|
|
R00388=>R00231\R00232\R00335\R00668\R00669\R00761\R01081\R01345\R01445\R01446\R02955\R02957 |
37 |
0 |
37 |
64 |
|
|
Synechocystis PCC6803 |
NF-1=>R03553 |
356 |
6328 |
9307 |
12568 |
|
TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a |
449 |
12871 |
13209 |
14597 |
|
|
NF-1=>R00291 |
469 |
696 |
3506 |
5305 |
|
|
Rickettsia prowazekii |
YY1=>TFIID |
16 |
335 |
551 |
975 |
|
N-Oct-3=>ETF |
14 |
445 |
1334 |
1728 |
|
|
YY1=>SEF4 |
22 |
872 |
1017 |
1275 |
|
|
YY1=>R01513 |
24 |
1024 |
2265 |
3051 |
|
|
Pit-1a=>N-Oct-3 |
18 |
111 |
2571 |
2991 |
|
|
R00671\R00689\R00938\R01128\R01129\R01191\R04293=>TFIID |
14 |
2037 |
2382 |
2869 |
|
|
R00671\R00689\R00938\R01128\R01129\R01191\R04293=>R00583 |
16 |
4769 |
5071 |
5716 |
|
|
R00671\R00689\R00938\R01128\R01129\R01191\R04293=>R01513 |
18 |
0 |
2519 |
3374 |
|
|
Pit-1a=>R01598 |
18 |
0 |
869 |
1035 |
|
|
ETF=>TFIID |
14 |
2724 |
2754 |
2982 |
|
|
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