Electronic Journal of Biotechnology ISSN: 0717-3458
  © 2000 by Universidad Católica de Valparaíso -- Chile
Vol. 3 No. 3, Issue of December 15, 2000
 


Table 4. The association rules in a small scale (repetitive sequences) and genome scale.

Organism

Association Rules

Occurrences in Repeats

Occurrences in Genome

Window=1

Window =5

Window =10

Thermotoga maritima

c-Ets-2=>R03553

272

1506

1700

2019

R03553=>R01230

220

0

56

332

c-Ets-2=>R01230

218

0

66

206

Mycoplasma genitalium

TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a

208

3785

3954

4557

Treponema pallidum subsp. Pallidum

Sp1=>R03047

33

549

719

1219

Sp1=>T-Ag

39

984

1285

1779

Sp1=>GAL4

39

474

1150

1883

GAL4=>R04141

39

0

1641

1853

R01203=>R04398

33

0

602

817

GAL4=>R03047

39

0

161

416

R04398=>R00290\R01241\R01244

43

879

894

940

Ureaplasma urealyticum

YY1=>R01513

62

754

2003

2614

YY1=>Pit-1a

60

0

893

1859

N-Oct-3=>Pit-1a

64

179

2610

3230

TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a

72

3202

3295

3650

Pit-1a=>R01598

50

0

1305

1621

Pit-1a=>YY1

60

0

893

1859

R01513=>YY1

62

754

2003

2614

Pyrococcus abyssi

YY1=>R00231\R00232\R00335\R00668\R00669\R00761\R01081\R01345\R01445\R01446\R02955\R02957

39

0

34

105

YY1=>R00388

41

0

48

175

R00388=>R00231\R00232\R00335\R00668\R00669\R00761\R01081\R01345\R01445\R01446\R02955\R02957

37

0

37

64

Synechocystis PCC6803

NF-1=>R03553

356

6328

9307

12568

TCF-1alpha\TCF-1\TCF-1F\TCF-1G\TCF-1E\TCF-1C\TCF-1B\TCF-1A\TCF-2alpha\LEF-1=>MNB1a

449

12871

13209

14597

NF-1=>R00291

469

696

3506

5305

Rickettsia prowazekii

YY1=>TFIID

16

335

551

975

N-Oct-3=>ETF

14

445

1334

1728

YY1=>SEF4

22

872

1017

1275

YY1=>R01513

24

1024

2265

3051

Pit-1a=>N-Oct-3

18

111

2571

2991

R00671\R00689\R00938\R01128\R01129\R01191\R04293=>TFIID

14

2037

2382

2869

R00671\R00689\R00938\R01128\R01129\R01191\R04293=>R00583

16

4769

5071

5716

R00671\R00689\R00938\R01128\R01129\R01191\R04293=>R01513

18

0

2519

3374

Pit-1a=>R01598

18

0

869

1035

ETF=>TFIID

14

2724

2754

2982


 
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