Electronic Journal of Biotechnology ISSN: 0717-3458
  © 2009 by Universidad Católica de Valparaíso -- Chile
Vol. 12 No. 3, Issue of July 15, 2009
 


Table 1. Summary of Boty-II elementsin the B. cinerea B05.10 genome.


Names of Boty-II
(Genome location)

Names and Short inverted terminal repeats of LTR
(Genome location)

Putative internal
protein
(Genbank
Accession
numbers;
Genome
location)

Putative conserved domains of internal protein

Target site duplications

 

S-II-2
TGTCA…TGACA
(Supercontig 2:
429990-430147 +)

 

  

ACTA

 

S-II- 6
TGTCA…TGACA
(Supercontig 6:
34252-34400 +)

 

  

 

  

S-II-21
TGTCA…TGACA
(Supercontig 21: 21:
668-816 +)

 

  

GAAAA

  

S-II-27
TATCA…TGACA
(Supercontig 27 :
18469-18621 +)

 

  

 

 

S -II-51
TGTCA…TGACA
(Supercontig 51 :
163167-163291 +)

 

  

ATA

  

S-II- 59
TGTCA…TGACA
(Supercontig 59:
225815-225963 +)

 

  

TTATA

Boty-II-76
(Supercontig 76:
146126-152564 +)

Boty-II-76- L
TGTCA…TGACA
(Supercontig 76:
146126-146274 +)

hypothetical protein BC1G_11096
(XP_001550688;
Supercontig 76:
146446-152348+)

RT, INT

ACCAT

  

Boty-II-76- R
TGTCA…TGACA
(Supercontig 76:
152416-152564 +)

 

  

  

Boty-II-95
(Supercontig 95:
159369-N*-)

Boty-II-95-R
TGTCA…TGACA
(Supercontig 95 :
159369-159517 -)

 

  

  

  

S-II-97
TGTCA…TGACA
(Supercontig 97 :
149630-149778 -)

 

 

CTACA

Boty-II-103
(Supercontig 103:
46221-52659 -)

Boty-II-103-L
TGTCA…TGATA
(Supercontig 103:
46221-46369 -)

hypothetical protein
BC1G_12501
(XP_001548841;
Supercontig 103:
46493-52339-)

RT, INT

CTTTC

  

Boty-II-103-R
TGTCA…TGATA
(Supercontig 103:
52511-52659 -)

 

  

  

Boty-II-141 (Supercontig 141: 1246-6523 -)

Boty-II-141-R
TGTCA…TGACA
(Supercontig 141:
193-337 -)

hypothetical protein
BC1G_14556
(Supercontig 141: XP_001547118;
Supercontig 141: 623-2824)

INT

  

  

Boty-II-141-L
TGTCA…TGACA
(Supercontig 141:
6375-6523 -)

 

  

  

INT indicates DDE integrase domain; RT indicates reverse transcriptase domain; N indicates there are gaps in the genome.

 

Supported by UNESCO / MIRCEN network