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Electronic Journal of Biotechnology ISSN: 0717-3458
  © 2008 by Universidad Católica de Valparaíso -- Chile
Vol. 11 No. 5, Special Issue of December 15, 2008
 

Table 3. Data on the number of alleles, allele size range, highest allele frequency and genic diversity (H) at each 48 loci found among 18 rice genotypes. Allele number and genic diversity for each SSR marker were also calculated considering only the Venezuelan accessions (in brackets).


Marker

Chromosome location

No. of alleles

Size range (bp)

Difference (bp)

Highest frequency allele

H

Size

Frequency

(bp)

(%)

RM110

2

7 (5)

142-162

20

142

36.1

0.792 (0.731)

RM129

1

3 (2)

188-208

20

208

72.2

0.426 (0.355)

RM134

7

3 (2)

85-99

14

95

66.7

0.475 (0.426)

RM144

11

8 (5)

220-257

37

220

38.9

0.779 (0.689)

RM148

3

3 (2)

131-138

7

131

58.8

0.526 (0.473)

RM165

1

4 (1)

180-190

10

190

77.8

0.377 (0.000)

RM169

5

5 (2)

166-180

14

166

77.8

0.383 (0.142)

RM174

2

6 (4)

204-228

24

212

33.3

0.765 (0.710)

RM179

12

5 (4)

188-195

7

192

36.1

0.752 (0.743)

RM186

3

2 (2)

115-132

47

132

63.9

0.461 (0.355)

RM188

5

3 (1)

212-225

13

212

88.9

0.204 (0.000)

RM206

11

6 (4)

130-152

22

135

77.8

0.384 (0.275)

RM212

1

4 (3)

113-135

22

117

52.8

0.628 (0.606)

RM216

10

4 (3)

131-146

15

135

36.1

0.707 (0.624)

RM239

10

5 (3)

143-152

9

146

44.4

0.710 (0.544)

RM262

2

5 (4)

138-158

20

156

36.1

0.742 (0.660)

RM263

2

6 (4)

158-187

29

160

33.3

0.753 (0.698)

RM272

1

2 (1)

120-123

3

120

94.4

0.105 (0.000)

RM286

11

5 (3)

98-123

25

98

55.6

0.636 (0.379)

RM296

9

4 (3)

117-128

11

121

66.7

0.512 (0.544)

RM30

6

5 (4)

77-87

10

82

72.2

0.455 (0.388)

RM300

2

6 (3)

116-172

56

125

50.0

0.679 (0.521)

RM338

3

2 (1)

183-186

3

186

88.9

0.198 (0.000)

RM402

6

3 (2)

130-140

10

135

61.1

0.512 (0.473)

RM408

8

5 (2)

120-130

10

123

52.8

0.640 (0.453)

RM411

3

3 (2)

107-115

8

107

66.7

0.475 (0.260)

RM414

1

2 (1)

220-225

5

220

83.3

0.278 (0.000)

RM436

7

3 (1)

83-134

51

85

77.8

0.364 (0.000)

RM441

11

5 (3)

186-195

9

189

50.0

0.685 (0.544)

RM453

12

7 (4)

165-190

25

173

47.2

0.640 (0.568)

RM471

4

3 (2)

200-210

10

210

50.0

0.526 (0.500)

RM477

8

3 (1)

218-225

7

220

77.8

0.364 (0.000)

RM494

6

3 (1)

178-207

29

178

83.3

0.290 (0.000)

RM495

1

2 (2)

149-161

12

149

61.1

0.475 (0.426)

RM507

5

2 (1)

250-255

5

250

77.8

0.346 (0.000)

RM508

6

4 (3)

221-255

34

221

44.1

0.642 (0.517)

RM517

3

4 (2)

260-287

27

260

66.7

0.512 (0.260)

RM519

12

3 (1)

119-138

19

138

77.8

0.364 (0.000)

RM542

7

7 (3)

91-113

22

94

66.7

0.537 (0.272)

RM547

8

9 (4)

200-295

95

200-295

27.8

0.815 (0.675)

RM551

4

5 (4)

180-198

18

192

32.4

0.758 (0.686)

RM556

8

2 (2)

88-95

7

88

72.2

0.401 (0.260)

RM559

4

2 (1)

158-161

3

158

77.8

0.346 (0.000)

RM560

7

6 (4)

237-268

31

239

50.0

0.687 (0.565)

RM590

10

4 (3)

130-146

16

146

69.4

0.480 (0.210)

RM598

5

5 (4)

149-167

18

160

66.7

0.525 (0.568)

RM6

2

5 (4)

145-163

18

163

38.9

0.724 (0.660)

RM60

3

3 (1)

160-167

7

164

83.3

0.290 (0.000)

Total

 

203 (124*, 112**)

 

 

 

 

Mean

 

4.23 (2.58*, 3.11**)

 

 

60.9

0.524 (0.370*, 0.490**)

*Mean values for the 48 SSR loci.
** Mean value considering only polymorphic SSR loci.


Supported by UNESCO / MIRCEN network